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tfPatterns
is a standalone java tool, which is now behind the
Tfsitescan Sites analysis service.
It can also be customized or used in pipelines for high-throughput Tfsites analyses across a
library of sequences.
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IGBA-AMI-1 is an Amazon
AMI, with 700+ Bioconductor packages for genomics, gene expression, and cancer datasets
analysis. The AMI includes RServe (R server), a postgres server, and scripts for NGS analysis,
running in Ubuntu 18.04.
Services to facilitate implementation, or customization of this AMI for high-throughput analyses are also available
through an associated Services
offering.
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IGBA-AMI-2 is an Amazon AMI, with 600+ Bioconductor packages and an Anaconda environment for genomics and NGS analysis. The AMI includes RServe (R server), as well as support for NGS analysis using the t2t-chm13 (2022) version of the H sapiens genome. Background OS is Ubuntu 18.04. Services to facilitate implementation, or customization of this AMI for high-throughput analyses are also available through an associated Services offering. |